Thanks for the advice, I was thinking along the same lines

I have noticed that my shoulder only hurts doing military with the barbell. Not when doing it with the dumbells. Also, incline sometimes, depending on how I do it and how heavy I go, so I could just mix that up a bit and go with dumbells. Also, another thing is, my shoulders are probably one of my strongest points. They are pretty full, and quite strong, so it's okay if I go a bit lighter on them for a while.
I'm thinking (on shoulder days) to just to various extension exercises. I've done this for about 2 weeks now, and not only do I get a good pump out of it, there is no pain.
However, just curious, in terms of the pain, is it just a matter of time? Wait it out? Will this be something that just takes time? Or should I still go see a doctor about this? And if he DOES tell me to stop lifting (like you said, most people would just say lay off for a while) should I?
Thnx,
T.