Peace be unto you, SpyWizard.
I will now reply to the rest of your post, God-Willing.

Originally Posted by
spywizard
the Koran contradicts itself several times. For instance, it says that Moses was at the time of Noah.
I was scratching my head for a good five minutes after I read this. I had absolutely no idea what you were talking about, so I began searching Islamophobic websites to figure out what the basis of this was, since you did not quote any verses to help me out. In any case, I finally found where you got this from: the vitriolically anti-Islamic website (BibleProbe.com) says:
When I looked into the Quran at those two verses, I literally laughed out loud. I mean, when you actually read the verses in the Quran, let's just say it really destroys the credibility of this anti-Islamic website.
So here is the verse in question (7:136):
We punished the people of Pharaoh with years of droughts and shortness of crops; that they might receive admonition. But when good times came, they said, 'This is due to us.' And when gripped by calamity, they ascribed it to evil omens connected with Moses and those with him. Behold! Surely their evil fortune is only from God, but most of them know not.
They said to Moses: 'Whatever sign you may bring us to charm us with--we will not believe in you!' So We sent plagues on them: Wholesale death, locusts, lice, frogs, and blood: a succession of clear signs. But they were steeped in arrogance--a people given to sin.
Every time the penalty fell on them, they said: 'O Moses! On your behalf call on your Lord in virtue of his promise to you: If you will remove the penalty from us, we verily will trust you and will let the Children of Israel go with you.'
But every time We removed the penalty from them according to a fixed term which they had to fulfill,--Behold! they broke their word! So We exacted retribution from them: We drowned them in the sea, because they rejected Our Signs and failed to take warning from them.
And We made a people--considered weak and of no account--inheritors of lands in both east and west--lands whereon We sent down Our blessings. The fair promise of your Lord was fulfilled for the Children of Israel and We annihilated all that Pharaoh and his folk had done and that they had contrived. We took the Children of Israel with safety across the sea.
(Quran, 7:130-138)
The bolded part above is verse 7:136, which the anti-Islamic website is claiming is the Great Flood which wiped out the People of Noah. Yet, it is abundantly clear that this verse is not at all talking about the Great Flood, but it is talking about when God parted the seas for Moses [as] and his people--and then drowned Pharaoh and his people in it!
So what inconsistency are we talking about!? It is perfectly consistent, and a very beautiful passage.
As for the second verse which the website quoted, namely verse 7:59, it reads as follows:"We sent Noah to his people. He said: 'O my people, worship God. You have no other god but Him. I fear for you the punishment of a dreadful day.'" (Quran, 7:59)
Exactly what inconsistency is there?
It says that Mary, the mother of Jesus, was the sister of Aaron. Aaron did have a sister named Mary, or Miriam, but she was not the mother of Jesus.
The verse in question is:
"At length she brought the babe to her people, carrying him in her arms. They said: 'O Mary! Truly an amazing thing have you brought! O sister of Aaron! Your father was not a man of evil, nor your mother a woman unchaste!'" (Quran, 19:27-28)
Throughout the Quran, the prophets are referred to as brothers of one another. Prophet Muhammad [s] said for instance that he is the brother of Moses [as]. When the Jews would do a fast in honor of Prophet Moses [as] on the day when his people escaped from the Pharaoh, Prophet Muhammad [s] commanded the Muslims to also fast on this day, saying: "I have more right to my brother Moses."
Does anyone interpret this to mean that Prophet Muhammad [s] thought he was the blood brother of Moses [as]? No, he meant brother in faith, which is a superior form of brotherhood.
One of the Prophet's wives was a Jewish convert to Islam named Saffiyah. The other co-wives got a bit jealous of her and quipped "We are dearer to the Prophet than you. We are not only his wives, but also his cousins." By this, they meant that they belonged to the same Arab tribe as the Prophet [s]. Saffiyah was saddened by this quip; when the Prophet [s] saw her sad, he [s] asked her what the matter was. She told him, and he consoled her by saying:
"Should they do it again, you can tell them: how can you be in a better position than mine when Muhammad is my husband, Aaron is my father, and Moses is my uncle?"
Now obviously Prophet Muhammad [s] knew that Saffiyah was not the blood daughter of Aaron [as], but rather he [s] simply meant that she was descended from him.
Throughout the Quran, you will find such references. It is a bit disingenuous then to turn up a nose at Mary [as] being called the "sister of Aaron." It should be noted that the phrase "sister of Aaron" is used for Mary [as] as opposed to "daughter of Aaron" to denote their parity, such as how Prophet Muhammad [s] was called the "brother of Moses" and not the "son of Moses."
Perhaps to seal the argument is the fact that the Prophet Muhammad [s] himself explained this verse in the Quran (Quran 19:27-28). The Prophet's disciple narrates:"When I came to Najran, they (the Christians of Najran) asked me: 'You read 'O sister of Aaron' in the Quran, whereas Moses was born much before Jesus.' When I came back to God's Messenger, I asked him about that, whereupon he said: 'The people (of ancient times) used to give names (to their persons) after the names of prophets and pious persons who had gone before them.'" (Sahih Muslim, 5326)
Therefore, the accusation that the Prophet [s] was not cognizant of the fact that Aaron [as] lived long before Mary [as] cannot be true at all.
One last thing: our Christian cousins oftentimes throw stones from their glass house. If they were but to open their own Bible, they would find such sort of references. For example, Elizabeth was called the daughter of Aaron, even though she was not a literal daughter of Aaron:"In the days of Herod, King of Judea, there was a priest named Zechari'ah, of the division of Abi'jah; and he had a wife of the daughters of Aaron, and her name was Elizabeth." [Luke 1:5, RSV]
Jesus [as] was addressed as the Son of David in the Bible:"And the crowds that went before him and that followed him shouted, 'Hosanna to the Son of David! Blessed is he who comes in the name of the Lord! Hosanna in the highest!'" [Matthew 21:9 RSV]
"But when the chief priests and the scribes saw the wonderful things that he did, and the children crying out in the temple, 'Hosanna to the Son of David!' they were indignant." [Matthew 21:15 RSV]
Should we Muslims now dance and point, saying mockingly: "Look, your Bible doesn't even know that David lived hundreds of years before Jesus!" Of course not. That would be childish.
Descriptions are contradictory in how Mohammed was called to be a prophet. It says that Mohammed was called by God, that he was called by the Holy Spirit, that he was called by angels, and that Gabriel called him.
Nothing is contradictory here. Rather, we believe that Prophet Muhammad [s] spoke to the Arch-Angel Gabriel, other angels, as well as directly to God Himself. What is the contradiction here?
In some places Muslims are called to love ‘people of the book’, Christians and Jews, and in other places called to kill them.
Nowhere in the Quran are Muslims told to kill the People of the Book. For that matter, I do not believe there is any verse in the Quran that says to love them either. Rather, the Quran says to treat the People of the Book with kindness, mercy, and courteousness. It says to treat them with graciousness, except those from amongst them who are oppressors, transgressors, and who do great harm to the Muslims.
Even when the early Muslims found themselves fighting the Christian Byzantine empire, the Second Caliph of the Muslims did not pray for the utter destruction of all Christians. Rather, he prayed:
“Oh God, deal with the disbelievers from the People of the Book that hinder others from Your religion and that fight Your righteous servants.” (Asbāb al-Thabāt ‘alá al-Dīn)
So we are instructed in the Quran to be kind and courteous to the People of the Book, except those of them who fight us, kill our women and children, and drive us out of our homes. This is not inconsistent at all; rather, it is complete and very consistent. For example, during the Crusades, when Saladin [r] liberated Jerusalem, he did not expel all of the Christians. Rather, he let them stay in safety unharmed and protected, only ordering the Crusaders (armed soldiers who had committed grave atrocities) to leave. (And even then he escorted them to safety.)
Hope that clarifies.
In the Care of the Lord,
-Saladin.